1BIW

DESIGN AND SYNTHESIS OF CONFORMATIONALLY-CONSTRAINED MMP INHIBITORS

Structural Biology Knowledgebase: 1BIW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.247

Literature

Macromolecules
Sequence Display for 1BIW

Classification: HYDROLASE

Total Structure Weight: 39750.94

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (STROMELYSIN-1 COMPLEX) A, B 173 Homo sapiens EC#: 3.4.24.17 IUBMB
Details: COMPLEXED TO PGV-25680
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
S80
Query on S80

B N1-HYDROXY-2-(3-HYDROXY-PROPYL)-3-ISOBUTYL- N4-[1-(2-METHOXY-ETHYL)-2-OXO-AZEPAN-3-YL]- SUCCINAMIDE
A DISUBSTITUTED SUCCINYL CAPROLACTAM HYDROXYMATE MMP3 INHIBITOR (Synonym)
C20 H37 N3 O6
JLEGVELHGVWFGG-BBWFWOEESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
S80 IC50: 104 nM (100) BindingDB

IC50: 104 nM  BindingMOAD
IC50: 104 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.247
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.06 α = 90.00
b = 77.28 β = 90.00
c = 106.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-06-19
  • Released Date: 1999-07-16
  • Deposition author(s): Natchus, M.G., Cheng, M., Wahl, C.T., Pikul, S., Almstead, N.G., Bradley, R.S., Taiwo, Y.O., Mieling, G.E., Dunaway, C.M., Snider, C.E., McIver, J.M., Barnett, B.L., McPhail, S.J., Anastasio, M.B., De, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4