1BDQ

HIV-1 (2:31-37, 47, 82) PROTEASE COMPLEXED WITH INHIBITOR SB203386

Structural Biology Knowledgebase: 1BDQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1BDQ

Classification: HYDROLASE

Total Structure Weight: 21902.15

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: T31S, V32I, L33V, E34A, E35G, M36I, S37E, I47V, V82I
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IM1
Query on IM1

B (2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5- (TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL- N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE
C31 H42 N4 O4
QAHXABIFJPGWDD-WKAQUBQDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IM1 N/A in BindingDB
Ki: 460 nM  BindingMOAD
Ki: 460 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.191
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.91 α = 90.00
b = 62.91 β = 90.00
c = 83.56 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-10
  • Released Date: 1998-08-12
  • Deposition author(s): Swairjo, M.A., Abdel-Meguid, S.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4