1BD2

COMPLEX BETWEEN HUMAN T-CELL RECEPTOR B7, VIRAL PEPTIDE (TAX) AND MHC CLASS I MOLECULE HLA-A 0201


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.312
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1BD2

Classification: COMPLEX (MHC / VIRAL PEPTIDE / RECEPTOR)

Total Structure Weight: 94860.36

Macromolecule Entities
Molecule Chains Length Organism Details
HLA-A 0201 A 275 Homo sapiens Fragment: EXTRACELLULAR DOMAINS ALPHA 1, ALPHA 2, ALPHA 3
Gene Name(s): HLA-A Gene View HLAA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA-2 MICROGLOBULIN B 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TAX PEPTIDE C 9 Primate t-lymphotropic virus 1 Fragment: RESIDUES 11 - 19 FROM TAX PROTEIN OF HUMAN T LYMPHOTROPIC VIRUS TYPE 1
Gene Name(s): tax
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
T CELL RECEPTOR ALPHA D 204 Homo sapiens Fragment: EXTRACELLULAR DOMAINS V AND C, RESIDUES 1 - 210
Mutation: E56A, ΔK119, G93M, A94E, ΔT123, S102Q, T105V, T108Q, Q113T, V114I, T115N, L116P, D117N
Gene Name(s): hADV29S1 TRAV29DV5 TRAC TCRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
T CELL RECEPTOR BETA E 244 Homo sapiens Fragment: EXTRACELLULAR DOMAINS V AND C, RESIDUES 1 - 247
Mutation: F96Y, R98G, Q99G, P100G, S101F, ΔN121, F107Y, L117T, C192A, N206D
Gene Name(s): TRBV6-5 TCRBV13S1 TRBC2 TCRBC2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.312
  • R-Value Work: 0.238
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.80 α = 90.00
b = 73.30 β = 90.00
c = 217.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-12
  • Released Date: 1998-08-19
  • Deposition author(s): Ding, Y.-H., Smith, K.J., Garboczi, D.N., Utz, U., Biddison, W.E., Wiley, D.C.

Revision History

  • Version 1_0: 1998-08-19

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2012-12-12

    Type: Other

  • Version 1_4: 2013-03-13

    Type: Other

  • Version 1_5: 2016-05-25

    Type: Structure summary