1BBD

THREE DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TO HUMAN RHINOVIRUS SEROTYPE 2

Structural Biology Knowledgebase: 1BBD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed: 0.190

Literature

Macromolecules
Sequence Display for 1BBD

Classification: IMMUNOGLOBULIN

Total Structure Weight: 48101.57

Macromolecule Entities
Molecule Chains Length Organism Details
IGG2A-KAPPA 8F5 FAB (LIGHT CHAIN) L 220 Mus musculus Mutation: S12T, S14T, A15T, R18K, S22T, G33R, N34T, F38Y, A40T, P49S, G56W, T80S, S83G, D97N, H98Y, S99N
Gene Name(s): Igkv8-30 Gm10883
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IGG2A-KAPPA 8F5 FAB (HEAVY CHAIN) H 218 Mus musculus Mutation: K13R, T16A, A24T, T32I, Y35H, I51L, N57Y, E59K, F60Y, R63K, L65Q, A72V, Q82H, V83L, H102Y, L103Y, H104D, G105M, P106D, Q110P, L113S, A118S

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.70 α = 90.00
b = 86.80 β = 90.00
c = 128.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1992-05-05
  • Released Date: 1994-01-31
  • Deposition author(s): Tormo, J., Blaas, D., Fita, I.

Revision History

  • 2014-02-05
    Type: Source and taxonomy | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4