1B5G

HUMAN THROMBIN COMPLEXED WITH NOVEL SYNTHETIC PEPTIDE MIMETIC INHIBITOR AND HIRUGEN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 1B5G

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 36022.01

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-THROMBIN L 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ALPHA-THROMBIN H 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
HIRUGEN I 12 Hirudo medicinalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0ZE
Query on 0ZE

H [[[(4S,5S)-4-[[(3S,6S,8aR)-6-azanyl-5-oxo- 6-(phenylmethyl)-1,2,3,7,8,8a-hexahydroindolizin- 3-yl]carbonylamino]-5-(1,3-benzothiazol-2- yl)-5-hydroxy-pentyl]amino]-azanyl-methylidene]azanium
MOL-168 (Synonym)
C29 H38 N7 O3 S
DKILHAQNHIMEGI-ICSWELKVSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TYS
Query on TYS
I L-PEPTIDE LINKING C9 H11 N O6 S TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Observed:
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 70.84 α = 90.00
b = 72.08 β = 100.90
c = 73.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-03-05
  • Released Date: 1998-05-27
  • Deposition author(s): St Charles, R., Tulinsky, A., Kahn, M.

Revision History

  • Version 1_0: 1998-05-27

    Type: Initial release

  • Version 1_1: 2008-05-22

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance

  • Version 1_3: 2015-03-25

    Type: Database references