1B5D

DCMP Hydroxymethylase from T4 (Intact)

Structural Biology Knowledgebase: 1B5D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 1B5D

Classification: TRANSFERASE

Total Structure Weight: 57661.28

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (DEOXYCYTIDYLATE HYDROXYMETHYLASE) A, B 246 Enterobacteria phage t4 sensu lato EC#: 2.1.2.8 IUBMB
Gene Name(s): 42
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DCM
Query on DCM

A, B 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
C9 H14 N3 O7 P
NCMVOABPESMRCP-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.160
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 176.23 α = 90.00
b = 53.29 β = 115.54
c = 75.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-01-06
  • Released Date: 1999-01-13
  • Deposition author(s): Song, H.K., Sohn, S.H., Suh, S.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values