1B59

COMPLEX OF HUMAN METHIONINE AMINOPEPTIDASE-2 COMPLEXED WITH OVALICIN

Structural Biology Knowledgebase: 1B59 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1B59

Classification: HYDROLASE

Total Structure Weight: 41869.71

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (METHIONINE AMINOPEPTIDASE) A 370 Homo sapiens EC#: 3.4.11.18 IUBMB
Details: OVALICIN COVALENTLY LINKED TO HIS 231 NE2
Gene Name(s): METAP2 Gene View MNPEP P67EIF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OVA
Query on OVA

A 3,4-DIHYDROXY-2-METHOXY-4-METHYL-3-[2-METHYL- 3-(3-METHYL-BUT-2-ENYL) -OXIRANYL]-CYCLOHEXANONE
OVALICIN (Synonym)
C16 H26 O5
UOXVFQCRPDLSFN-DGXTUMSLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO
Query on CO

A COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.178
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.72 α = 90.00
b = 99.11 β = 90.00
c = 101.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-01-13
  • Released Date: 2000-01-14
  • Deposition author(s): Liu, S., Clardy, J.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4