1B2L

ALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONENSIS: TERNARY COMPLEX WITH NAD-CYCLOHEXANONE

Structural Biology Knowledgebase: 1B2L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1B2L

Classification: OXIDOREDUCTASE

Total Structure Weight: 28876.22

Macromolecule Entities
Molecule Chains Length Organism Details
ALCOHOL DEHYDROGENASE A 254 Scaptodrosophila lebanonensis EC#: 1.1.1.1 IUBMB
Details: CYCLOHEXANONE
Gene Name(s): Adh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDC
Query on NDC

A NICOTINAMIDE ADENINE DINUCLEOTIDE CYCLOHEXANONE
C27 H35 N7 O15 P2
HTFHWJHTWKCYLR-RINXRSLZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DTT
Query on DTT

A 2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL (Synonym)
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYH
Query on CYH

A CYCLOHEXANONE
C6 H10 O
JHIVVAPYMSGYDF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.190
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 54.10 α = 90.00
b = 54.10 β = 90.00
c = 168.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-11-26
  • Released Date: 1999-11-26
  • Deposition author(s): Benach, J., Atrian, S., Gonzalez-Duarte, R., Ladenstein, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values