1B2I

KRINGLE 2 DOMAIN OF HUMAN PLASMINOGEN: NMR SOLUTION STRUCTURE OF TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID (AMCHA) COMPLEX

Structural Biology Knowledgebase: 1B2I SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 150
  • Conformers Submitted: 20
  • Selection Criteria: Total Energy Ramachandran Plot Least Restraint Violation

Literature

Macromolecules
Sequence Display for 1B2I

Classification: HYDROLASE

Total Structure Weight: 9809.08

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (PLASMINOGEN) A 83 Homo sapiens EC#: 3.4.21.7 IUBMB
Fragment: KRINGLE 2 DOMAIN
Mutation: C-4T, E-3S, C4G
Gene Name(s): PLG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMH
Query on AMH

A TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID
C8 H15 N O2
GYDJEQRTZSCIOI-LJGSYFOKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AMH IC50: 3100 - 12000 nM (98) BindingDB
Kd: 1100 - 750000 nM (98) BindingDB

N/A in BindingMoad
IC50: 3100 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 150
  • Conformers Submitted: 20
  • Selection Criteria: TOTAL ENERGY, RAMACHANDRAN PLOT, LEAST RESTRAINT VIOLATION

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-24
  • Released Date: 1999-11-19
  • Deposition author(s): Marti, D.N., Schaller, J., Llinas, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4