1AXU

SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 24
  • Conformers Submitted: 9
  • Selection Criteria: The Best Total Energy

Literature

Macromolecules
Sequence Display for 1AXU

Classification: DNA

Total Structure Weight: 6949.75

Macromolecule Entities
Molecule Chains Length Organism Details
DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) A 11 synthetic N1 ATOM OF AP LINKED TO C8 ATOM OF DG6
DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) B 11 synthetic N1 ATOM OF AP LINKED TO C8 ATOM OF DG6

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AP
Query on AP

A N-1-AMINOPYRENE
C16 H11 N
YZVWKHVRBDQPMQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 24
  • Conformers Submitted: 9
  • Selection Criteria: THE BEST TOTAL ENERGY

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-10-21
  • Released Date: 1998-07-01
  • Deposition author(s): Gu, Z., Gorin, A.A., Krishnasami, R., Hingerty, B.E., Basu, A.K., Broyde, S., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4