1AXS

MATURE OXY-COPE CATALYTIC ANTIBODY WITH HAPTEN

Structural Biology Knowledgebase: 1AXS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1AXS

Classification: CATALYTIC ANTIBODY

Total Structure Weight: 95941.92

Macromolecule Entities
Molecule Chains Length Organism Details
OXY-COPE CATALYTIC ANTIBODY A, L 211 Homo sapiens Fragment: FAB FRAGMENT
Mutation: L11M, S12Y, V15L, D17E, N28D, D30N, K31S, Y36F, A43S, L46T, N50R, N53R, Q55V, T56D, T69Q, F71Y, T72S, F73L, Q79E, P80Y, I83M, A84G, T85I, H91Y, I92D, S93E, R94F, R96Y, Q100S, V104L
Details: CHIMERIC FAB FRAGMENT
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
OXY-COPE CATALYTIC ANTIBODY B, H 221 Homo sapiens Fragment: FAB FRAGMENT
Details: CHIMERIC FAB FRAGMENT

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HOP
Query on HOP

B, H (1S,2S,5S)2-(4-GLUTARIDYLBENZYL)-5-PHENYL- 1-CYCLOHEXANOL
OXY-COPE-HAPTEN (Synonym)
C23 H27 N O4
OBWILOKKNDYPLX-HBMCJLEFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, H, L CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HOP N/A in BindingDB
N/A in BindingMoad
Kd: 17 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.200
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.78 α = 90.00
b = 81.50 β = 93.43
c = 128.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-10-20
  • Released Date: 1998-02-04
  • Deposition author(s): Mundorff, E.C., Ulrich, H.D., Stevens, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4