1AL7

THREE-DIMENSIONAL STRUCTURES OF GLYCOLATE OXIDASE WITH BOUND ACTIVE-SITE INHIBITORS

Structural Biology Knowledgebase: 1AL7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1AL7

Classification: FLAVOPROTEIN

Total Structure Weight: 40092.48

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCOLATE OXIDASE A 359 Spinacia oleracea EC#: 1.1.3.15 IUBMB
Details: GLYCOLATE OXIDASE COMPLEXED WITH FMN AND AN INHIBITOR
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HST
Query on HST

A 4-CARBOXY-5-(1-PENTYL)HEXYLSULFANYL-1,2,3- TRIAZOLE
C14 H25 N3 O2 S
GROSWUGUHPUYIU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HST N/A in BindingDB
N/A in BindingMoad
Ki: 16 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.180
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 148.10 α = 90.00
b = 148.10 β = 90.00
c = 136.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-06-12
  • Released Date: 1997-11-12
  • Deposition author(s): Stenberg, K., Lindqvist, Y.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4