1A8G

HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910

Structural Biology Knowledgebase: 1A8G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.150

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1A8G

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 22487.75

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2Z4
Query on 2Z4

A benzyl [(1R)-1-({(1S,2S,3S)-1-benzyl-2-hydroxy- 4-({(1S)-1-[(2-hydroxy-4-methoxybenzyl)carbamoyl]- 2-methylpropyl}amino)-3-[(4-methoxybenzyl)amino]- 4-oxobutyl}carbamoyl)-2,2-dimethylpropyl]carbamate
SDZ283-910 (Synonym)
C46 H59 N5 O9
YRESVHUBNCFVEW-FSYSLULESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2Z4 N/A in BindingDB
Ki: 7.4 nM  BindingMOAD
N/A in PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000417 (TBG,VAL,PHQ,HV8,HV7) A INHIBITOR SDZ283-910 Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.150
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.10 α = 90.00
b = 63.10 β = 90.00
c = 83.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-03-24
  • Released Date: 1998-07-15
  • Deposition author(s): Kallen, J., Billich, A., Scholz, D., Auer, M., Kungl, A.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords