1A86

MMP8 WITH MALONIC AND ASPARTIC ACID BASED INHIBITOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 1A86

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 18202.50

Macromolecule Entities
Molecule Chains Length Organism Details
MMP-8 A 158 Homo sapiens EC#: 3.4.24.34 IUBMB
Gene Name(s): MMP8 Gene View CLG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0ZB
Query on 0ZB

N-benzyl-N~2~-[(2R)-2-(hydroxycarbamoyl)- 4-methylpentanoyl]-L-alpha-asparagine
C18 H25 N3 O6
JXOYCIWPPBHZCO-KBPBESRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000371
Query on PRD_000371
A HONH-iBM-L-Asp-NHBn Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed:
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 33.14 α = 90.00
b = 69.43 β = 90.00
c = 72.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-04-03
  • Released Date: 1999-05-04
  • Deposition author(s): Brandstetter, H., Roedern, E.G.V., Grams, F., Engh, R.A.

Revision History

  • Version 1_0: 1999-05-04

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance

  • Version 1_3: 2012-12-12

    Type: Other