19HC

NINE-HAEM CYTOCHROME C FROM DESULFOVIBRIO DESULFURICANS ATCC 27774

Structural Biology Knowledgebase: 19HC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 19HC

Classification: ELECTRON TRANSPORT

Total Structure Weight: 73973.79

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (NINE-HAEM CYTOCHROME C) A, B 292 Desulfovibrio desulfuricans Gene Name(s): Ddes_2038
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.169
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 60.38 α = 90.00
b = 106.07 β = 103.50
c = 80.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-11-27
  • Released Date: 1999-12-01
  • Deposition author(s): Matias, P.M., Coelho, R., Pereira, I.A.C., Coelho, A.V., Thompson, A.W., Sieker, L., Gall, J.L., Carrondo, M.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4