198D

A TRIGONAL FORM OF THE IDARUBICIN-D(CGATCG) COMPLEX: CRYSTAL AND MOLECULAR STRUCTURE AT 2.0 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 198D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Observed: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 198D

Classification: DNA

Total Structure Weight: 9429.27

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') A, B, C, D 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM5
Query on DM5

A, B, D IDARUBICIN
4-DEMETHOXY-DAUNORUBICIN (Synonym)
C26 H27 N O9
XDXDZDZNSLXDNA-TZNDIEGXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SPM
Query on SPM

A SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Observed: 0.188
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 53.00 α = 90.00
b = 53.00 β = 90.00
c = 33.06 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1994-11-28
  • Released Date: 1995-03-15
  • Deposition author(s): Dautant, A., Langlois D'Estaintot, B., Gallois, B., Brown, T., Hunter, W.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4