NMR Ensemble

193D

SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX

Structural Biology Knowledgebase: 193D SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 4
  • Conformers Submitted: 4
  • Selection Criteria: All Calculated Structures Submitted

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 193D

Classification: DNA / ANTIBIOTIC

Total Structure Weight: 6078.67


Macromolecule Entities
Molecule Chains Length Organism Details
QUINOMYCIN C 8 Streptomyces
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*CP*AP*CP*GP*TP*GP*T)-3') A, B 8 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HQU
Query on HQU

C 3-HYDROXYQUINALDIC ACID
C10 H7 N O3
WHKZBVQIMVUGIH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000492 (DSN,ALA,NYB,NCY,CPC) C uk63052 Cyclic depsipeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 4
  • Conformers Submitted: 4
  • Selection Criteria: ALL CALCULATED STRUCTURES SUBMITTED

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-09-30
  • Released Date: 1995-02-27
  • Deposition author(s): Chen, H., Patel, D.J.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4