154D

DNA DISTORTION IN BIS-INTERCALATED COMPLEXES

Structural Biology Knowledgebase: 154D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.239

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 154D

Classification: DNA

Total Structure Weight: 3210.33

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*(CBR)P*GP*CP*G)-3') A, B 4 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLD
Query on FLD

B BIS-(N-ETHYLPYRIDINIUM-(3-METHOXYCARBAZOLE))HEXANE- 1,6-DIAMINE
FLEXI-DI (Synonym)
C42 H48 N6 O2
VJZICIMRPZDSEJ-UHFFFAOYSA-R
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
A, B DNA LINKING C9 H13 Br N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.239
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 27.09 α = 90.00
b = 27.09 β = 90.00
c = 81.89 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1993-12-14
  • Released Date: 1994-08-31
  • Deposition author(s): Peek, M.E., Lipscomb, L.A., Bertrand, J.A., Gao, Q., Roques, B.P., Garbay-Jaureguiberry, C., Williams, L.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4