4IKO

Structure of Peptidyl- tRNA Hydrolase from Acinetobacter baumannii at 1.90 A resolution

Structural Biology Knowledgebase: 4IKO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.156

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IKO

Classification: HYDROLASE

Total Structure Weight: 21639.82

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-tRNA hydrolase A 193 Acinetobacter baumannii EC#: 3.1.1.29 IUBMB
Gene Name(s): pth F911_03144 HMPREF0010_01329
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.156
  • Space Group: P 21 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 34.56 α = 90.00
b = 58.22 β = 90.00
c = 109.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-27
  • Released Date: 2013-01-30
  • Deposition author(s): Yamini, S., Kaushik, S., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.

Revision History

  • 2013-08-14
    Type: Citation | Details: Citation update
  • 2013-07-17
    Type: Citation | Details: Citation update