4IA1

Diastereotopic and Deuterium Effects in Gemini

Structural Biology Knowledgebase: 4IA1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IA1

Classification: TRANSCRIPTION / TRANSCRIPTION ACTIVATOR

Total Structure Weight: 35999.44

Macromolecule Entities
Molecule Chains Length Organism Details
Vitamin D3 receptor A A 300 Danio rerio Fragment: Ligand binding domain (unp residues 156-453)
Gene Name(s): vdra nr1i1a vdr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear receptor coactivator 2 B 13 Homo sapiens Fragment: unp residues 686-698
Gene Name(s): NCOA2 Gene View BHLHE75 SRC2 TIF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BIV
Query on BIV

A 21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE- 1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)- , (1A,3B,5Z,7E)
GEMINI (Synonym)
C32 H54 O4
WTQXZYVWLNPNEX-LKUPKUSPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.217
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.89 α = 90.00
b = 65.89 β = 90.00
c = 266.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-06
  • Released Date: 2013-04-24
  • Deposition author(s): Maehr, H., Rochel, N., Suh, N., Uskokovic, M.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update