4I9H

Crystal structure of rabbit LDHA in complex with AP28669

Structural Biology Knowledgebase: 4I9H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4I9H

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 297838.59

Macromolecule Entities
Molecule Chains Length Organism Details
L-lactate dehydrogenase A chain A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 331 Oryctolagus cuniculus EC#: 1.1.1.27 IUBMB
Gene Name(s): LDHA Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1E4
Query on 1E4

A, B, C, D, E, F, G, H 1-O-[3-(5-carboxypyridin-2-yl)-5-fluorophenyl]- 6-O-[4-({[(5-carboxypyridin-2-yl)sulfanyl]acetyl}amino)- 2-chloro-5-methoxyphenyl]-D-mannitol
C33 H31 Cl F N3 O12 S
HTDBANWISVPXTR-KWINWIPXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1E4 IC50: 220 - 440 nM (93) BindingDB
Kd: 68 nM (93) BindingDB

Kd: 68 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.207
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.87 α = 90.00
b = 139.69 β = 94.43
c = 138.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-05
  • Released Date: 2013-01-23
  • Deposition author(s): Zhou, T., Stephan, Z.G., Kohlmann, A., Li, F., Commodore, L., Greenfield, M.T., Shakespeare, W.C., Zhu, X., Dalgarno, D.C.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update