4HSB

S. pombe 3-methyladenine DNA glycosylase-like protein Mag2 bound to damaged DNA

Structural Biology Knowledgebase: 4HSB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HSB

Classification: Hydrolase / DNA

Total Structure Weight: 31414.94


Macromolecule Entities
Molecule Chains Length Organism Details
Probable DNA-3-methyladenine glycosylase 2 A 217 Schizosaccharomyces pombe EC#: 3.2.2.21 IUBMB
Gene Name(s): mag2 SPBC23G7.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3') B 11 synthetic
DNA (5'-D(P*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*C)-3') C 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
B DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.192
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 54.89 α = 90.00
b = 54.89 β = 90.00
c = 153.46 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-29
  • Released Date: 2013-01-23
  • Deposition author(s): Adhikary, S., Eichman, B.F.

Revision History

  • 2014-01-01
    Type: Other | Details: cut off i
  • 2013-04-10
    Type: Citation | Details: Citation update