4HNF

Crystal structure of ck1d in complex with pf4800567

Structural Biology Knowledgebase: 4HNF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.241

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HNF

Classification: transferase / transferase inhibitor

Total Structure Weight: 69421.52

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform delta A, B 296 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): CSNK1D Gene View HCKID

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
16W
Query on 16W

A, B 3-[(3-chlorophenoxy)methyl]-1-(tetrahydro- 2H-pyran-4-yl)-1H-pyrazolo[3,4-d]pyrimidin- 4-amine
C17 H18 Cl N5 O2
AUMDBEHGJRZSOO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
16W IC50: 32 - 711 nM (97 - 100) BindingDB

IC50: 711 nM  BindingMOAD
IC50: 711 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.241
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 171.22 α = 90.00
b = 48.11 β = 110.67
c = 80.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-19
  • Released Date: 2012-11-14
  • Deposition author(s): Huang, X, Long, A.M., Zhao, H.

Revision History

  • 2013-01-02
    Type: Citation | Details: Citation update
  • 2012-11-14
    Type: Citation | Details: Citation update