4HGW

Crystal structure of S25-2 in complex with a 5,6-dehydro-Kdo disaccharide

Structural Biology Knowledgebase: 4HGW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HGW

Classification: IMMUNE SYSTEM

Total Structure Weight: 48965.37

Macromolecule Entities
Molecule Chains Length Organism Details
Antibody Fab fragment, light chain A 219 Mus musculus
Antibody Fab fragment, heavy chain B 222 Mus musculus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KTU
Query on KTU

B prop-2-en-1-yl 3,5-dideoxy-alpha-D-threo- oct-5-en-2-ulopyranosidonic acid
C11 H16 O7
SDKKPKVWEQUWPM-VAOFZXAKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
KDO
Query on KDO

B 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
C8 H14 O8
NNLZBVFSCVTSLA-HXUQBWEZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.176
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.71 α = 90.00
b = 81.30 β = 90.00
c = 131.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-08
  • Released Date: 2013-01-09
  • Deposition author(s): Brooks, C.L., Evans, S.V.

Revision History

  • 2013-01-30
    Type: Citation | Details: Citation update