4HF5

Crystal structure of Fab 8F8 in complex a H2N2 influenza virus hemagglutinin

Structural Biology Knowledgebase: 4HF5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HF5

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 105644.56

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin HA1 A 327 Influenza a virus Gene Name(s): HA
Hemagglutinin HA2 B 174 Influenza a virus Gene Name(s): HA
Fab 8F8 heavy chain H 233 Homo sapiens
Fab 8F8 light chain L 218 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.229
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 136.62 α = 90.00
b = 136.62 β = 90.00
c = 142.13 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-04
  • Released Date: 2013-02-13
  • Deposition author(s): Xu, R., Wilson, I.A.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update