4H8A

Crystal structure of ureidoglycolate dehydrogenase in binary complex with NADH

Structural Biology Knowledgebase: 4H8A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H8A

Classification: OXIDOREDUCTASE

Total Structure Weight: 74968.99

Macromolecule Entities
Molecule Chains Length Organism Details
Ureidoglycolate dehydrogenase A, B 339 Escherichia coli EC#: 1.1.1.350 IUBMB
Gene Name(s): allD glxB8 ylbC b0517 JW0505

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.230
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 162.51 α = 90.00
b = 162.51 β = 90.00
c = 60.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-22
  • Released Date: 2013-01-16
  • Deposition author(s): Rhee, S., Shin, I., Kim, M.

Revision History

No revisions since initial release