4GSU

Structural basis for the inhibition of Mycobacterium tuberculosis L,D-transpeptidase by meropenem, a drug effective against extensively drug-resistant strains

Structural Biology Knowledgebase: 4GSU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GSU

Classification: TRANSFERASE

Total Structure Weight: 63332.83

Macromolecule Entities
Molecule Chains Length Organism Details
Probable conserved lipoprotein LPPS A, B 287 Mycobacterium tuberculosis EC#: 2.3.2 IUBMB
Fragment: UNP residues 131-408
Gene Name(s): ldtB MT2594 V735_02606

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DWZ
Query on DWZ

A, B (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin- 3-yl]sulfanyl}-2-[(1S,2R)-1-formyl-2-hydroxypropyl]- 3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid
C17 H27 N3 O5 S
UUIYVKJXUXGPKB-VGWSNGFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.186
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.94 α = 90.00
b = 73.43 β = 90.00
c = 104.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-28
  • Released Date: 2013-02-27
  • Deposition author(s): Kim, H.S., Kim, J., Im, H.N., Yoon, J.Y., An, D.R., Yoon, H.J., Kim, J.Y., Min, H.K., Kim, S.-J., Lee, J.Y., Han, B.W., Suh, S.W.

Revision History

  • 2013-08-07
    Type: Citation | Details: Citation update