4GPZ

Crystal structure of human B type phosphoglycerate mutase H11 phosphorylated form

Structural Biology Knowledgebase: 4GPZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GPZ

Classification: ISOMERASE HYDROLASE

Total Structure Weight: 60418.54

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphoglycerate mutase 1 A, B 262 Homo sapiens EC#: 3.1.3.13 IUBMB 5.4.2.11 IUBMB 5.4.2.4 IUBMB
Fragment: Human type B phosphoglycerate mutase
Gene Name(s): PGAM1 Gene View PGAMA CDABP0006
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
NEP
Query on NEP
A, B L-PEPTIDE LINKING C6 H10 N3 O5 P HIS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.185
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.36 α = 90.00
b = 81.17 β = 90.00
c = 90.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-22
  • Released Date: 2013-05-22
  • Deposition author(s): He, C., Zhou, L., Zhang, L.

Revision History

No revisions since initial release