4GNZ

Crystal structure of the c707s mutant of c-terminal domain of 10'formyltetrahydrofolate dehydrogenase in complex with NADP

Structural Biology Knowledgebase: 4GNZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 4GNZ

Classification: oxidoreductase

Total Structure Weight: 232455.95

Macromolecule Entities
Molecule Chains Length Organism Details
Cytosolic 10-formyltetrahydrofolate dehydrogenase A, B, C, D 517 Rattus norvegicus EC#: 1.5.1.6 IUBMB
Fragment: C-terminal domain, residues 397-902
Mutation: C707S
Gene Name(s): Aldh1l1 Fthfd
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.180
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 259.09 α = 90.00
b = 194.26 β = 108.74
c = 97.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-17
  • Released Date: 2013-01-23
  • Deposition author(s): Tsybovsky, Y.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update