4GKR

Structure of the C-terminal motor domain of Kar3 from Candida glabrata

Structural Biology Knowledgebase: 4GKR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 4GKR

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 84830.24

Macromolecule Entities
Molecule Chains Length Organism Details
Neck and C-terminal motor domain of Kar3 A, B 371 [candida] glabrata Fragment: UNP residues 324-692
Gene Name(s): KAR3 CAGL0D04994g
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.210
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.71 α = 90.00
b = 84.07 β = 90.00
c = 151.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-13
  • Released Date: 2012-10-03
  • Deposition author(s): Duan, D., Allingham, J.S.

Revision History

  • 2012-12-12
    Type: Citation | Details: Citation update
  • 2012-10-17
    Type: Citation | Details: Citation update