4GJD

Crystal structure of renin in complex with NVP-BGQ311 (compound 12)

Structural Biology Knowledgebase: 4GJD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GJD

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 76007.42

Macromolecule Entities
Molecule Chains Length Organism Details
Renin A, B 340 Homo sapiens EC#: 3.4.23.15 IUBMB
Fragment: UNP residues 67-406
Gene Name(s): REN Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0N0
Query on 0N0

A, B (3S,5R)-N-{[9-(4-methoxybutyl)-9H-xanthen- 9-yl]methyl}-5-{[(4-methylphenyl)sulfonyl]amino}piperidine- 3-carboxamide
C32 H39 N3 O5 S
LBPUIWQYAGTBDC-LOSJGSFVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0N0 IC50: 3 - 25 nM (100) BindingDB

N/A in BindingMoad
IC50: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.180
  • Space Group: P 21 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.92 α = 90.00
b = 141.92 β = 90.00
c = 141.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-09
  • Released Date: 2013-02-13
  • Deposition author(s): Ostermann, N., Zink, F., Kroemer, M.

Revision History

  • 2013-04-10
    Type: Citation | Details: Citation update