4FYI

Crystal structure of rcl with 6-cyclopentyl-AMP

Structural Biology Knowledgebase: 4FYI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FYI

Classification: HYDROLASE

Total Structure Weight: 70355.28

Macromolecule Entities
Molecule Chains Length Organism Details
Deoxyribonucleoside 5'-monophosphate N-glycosidase A, B, C, D 152 Rattus norvegicus EC#: 3.2.2 IUBMB
Fragment: UNP residues 11-151
Mutation: D69N
Gene Name(s): Dnph1 Rcl

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6C6
Query on 6C6

A, B, C, D N-cyclopentyladenosine 5'-(dihydrogen phosphate)
C15 H22 N5 O7 P
ZLXWBMMFOMQXRH-SDBHATRESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 91.57 α = 90.00
b = 118.87 β = 90.00
c = 57.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-04
  • Released Date: 2013-01-02
  • Deposition author(s): Labesse, G., Padilla, A., Kaminski, P.A.

Revision History

  • 2013-02-20
    Type: Citation | Details: Citation update