4FJU

Crystal structure of ureidoglycolate dehydrogenase in ternary complex with NADH and glyoxylate

Structural Biology Knowledgebase: 4FJU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.229

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FJU

Classification: OXIDOREDUCTASE

Total Structure Weight: 77807.96

Macromolecule Entities
Molecule Chains Length Organism Details
Ureidoglycolate dehydrogenase A, B 351 Escherichia coli EC#: 1.1.1.154 IUBMB
Gene Name(s): allD ECDH10B_0473

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLV
Query on GLV

A GLYOXYLIC ACID
GLYOXALATE, GLYOXYLATE (Synonym)
C2 H2 O3
HHLFWLYXYJOTON-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.229
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 162.76 α = 90.00
b = 162.76 β = 90.00
c = 61.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-12
  • Released Date: 2013-01-16
  • Deposition author(s): Kim, M.I., Rhee, S.

Revision History

No revisions since initial release