4F48

The X-ray structural of FimXEAL-c-di-GMP-PilZ complexes from Xanthomonas campestris

Structural Biology Knowledgebase: 4F48 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.249

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F48

Classification: SIGNALING PROTEIN

Total Structure Weight: 41198.90

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein A 250 Xanthomonas campestris Fragment: UNP residues 437-684
Gene Name(s): XCC2291
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Type IV fimbriae assembly protein B 117 Xanthomonas campestris Gene Name(s): pilZ XCC1024
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C2E
Query on C2E

A 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)- 3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro- 2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine- 2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin- 6-one)
c-di-GMP, Cyclic diguanosine monophosphate (Synonym)
C20 H24 N10 O14 P2
PKFDLKSEZWEFGL-MHARETSRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.249
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 158.22 α = 90.00
b = 158.22 β = 90.00
c = 64.81 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-10
  • Released Date: 2012-11-14
  • Deposition author(s): Chin, K.-H., Liao, Y.-T., Chou, S.-H.

Revision History

No revisions since initial release