4EP5

Thermus thermophilus RuvC structure

Structural Biology Knowledgebase: 4EP5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 4EP5

Classification: HYDROLASE

Total Structure Weight: 18257.30

Macromolecule Entities
Molecule Chains Length Organism Details
Crossover junction endodeoxyribonuclease RuvC A 166 Thermus thermophilus EC#: 3.1.22.4 IUBMB
Mutation: D146N
Gene Name(s): ruvC TTHA1090
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.208
  • Space Group: I 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 35.18 α = 90.00
b = 60.02 β = 90.00
c = 135.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-17
  • Released Date: 2012-11-14
  • Deposition author(s): Chen, L., Shi, K., Yin, Z.Q., Aihara, H.

Revision History

  • 2013-01-16
    Type: Citation | Details: Citation update
  • 2012-11-14
    Type: Citation | Details: Citation update