4EFQ

Bombyx mori lipoprotein 7 - platinum derivative at 1.94 A resolution

Structural Biology Knowledgebase: 4EFQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EFQ

Classification: UNKNOWN FUNCTION

Total Structure Weight: 56562.61

Macromolecule Entities
Molecule Chains Length Organism Details
30kDa protein A, B 239 Bombyx mori Gene Name(s): LOC101735447

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PT
Query on PT

A, B PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A, B THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
0AF
Query on 0AF
A, B L-PEPTIDE LINKING C11 H12 N2 O3 TRP

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.185
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 41.81 α = 93.17
b = 49.78 β = 94.87
c = 54.96 γ = 102.86

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-30
  • Released Date: 2012-08-29
  • Deposition author(s): Pietrzyk, A.J., Panjikar, S., Bujacz, A., Mueller-Dieckmann, J., Jaskolski, M., Bujacz, G.

Revision History

  • 2013-01-23
    Type: Citation | Details: Citation update