4DRF

Crystal Structure of Bacterial Pnkp-C/Hen1-N Heterodimer

Structural Biology Knowledgebase: 4DRF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DRF

Classification: PROTEIN BINDING TRANSFERASE

Total Structure Weight: 150332.25

Macromolecule Entities
Molecule Chains Length Organism Details
Metallophosphoesterase A, C 427 Ruminiclostridium thermocellum Fragment: C-terminal half of bacterial Pnkp
Gene Name(s): Cthe_2768
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Methyltransferase type 12 B, D 230 Ruminiclostridium thermocellum Fragment: N-terminal half of bacterial Hen1
Gene Name(s): Cthe_2767
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.184
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.67 α = 81.27
b = 59.71 β = 87.67
c = 101.54 γ = 88.39

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-17
  • Released Date: 2012-08-01
  • Deposition author(s): Huang, R.H., Wang, P.

Revision History

  • 2012-08-29
    Type: Citation | Details: Citation update
  • 2012-08-15
    Type: Citation | Details: Citation update