4DPL

Structure of malonyl-coenzyme A reductase from crenarchaeota in complex with NadP

Structural Biology Knowledgebase: 4DPL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.163

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DPL

Classification: oxidoreductase

Total Structure Weight: 161414.05

Macromolecule Entities
Molecule Chains Length Organism Details
Malonyl-CoA/succinyl-CoA reductase A, B, C, D 359 Sulfolobus tokodaii EC#: 1.2.1.75 IUBMB
Gene Name(s): mcr scr STK_21710
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNL
Query on UNL

Unknown ligand
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.163
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.58 α = 90.00
b = 128.80 β = 90.00
c = 140.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-13
  • Released Date: 2013-01-16
  • Deposition author(s): Demmer, U., Warkentin, E, Srivastava, A., Kockelkorn, D., Fuchs, G., Ermler, U.

Revision History

  • 2013-03-20
    Type: Citation | Details: Citation update
  • 2013-01-30
    Type: Citation | Details: Citation update