4DNP

Crystal Structure of DAD2

Structural Biology Knowledgebase: 4DNP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 4DNP

Classification: HYDROLASE

Total Structure Weight: 30107.73

Macromolecule Entities
Molecule Chains Length Organism Details
DAD2 A 269 Petunia x hybrida Gene Name(s): DAD2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DTV
Query on DTV

A (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
C4 H10 O2 S2
VHJLVAABSRFDPM-QWWZWVQMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.167
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 129.26 α = 90.00
b = 129.26 β = 90.00
c = 129.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-08
  • Released Date: 2012-11-14
  • Deposition author(s): Hamiaux, C.

Revision History

  • 2013-06-26
    Type: Citation | Details: Citation update