4C7O

The structural basis of FtsY recruitment and GTPase activation by SRP RNA

Structural Biology Knowledgebase: 4C7O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.163

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4C7O

Classification: NUCLEAR PROTEIN / RNA

Total Structure Weight: 143565.70


Macromolecule Entities
Molecule Chains Length Organism Details
SIGNAL RECOGNITION PARTICLE PROTEIN A, C 298 Escherichia coli Fragment: RESIDUES 1-296
Gene Name(s): ffh b2610 JW5414
SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY B, D 278 Escherichia coli Fragment: NG DOMAIN, RESIDUES 224-497
Gene Name(s): ftsY b3464 JW3429
Macromolecule Entities
Molecule Chains Length Organism Details
SRP RNA E 48 Escherichia coli

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, B, C, D GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ALF
Query on ALF

A, B, C, D TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.163
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.72 α = 90.00
b = 166.33 β = 90.00
c = 154.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-23
  • Released Date: 2013-11-20
  • Deposition author(s): Voigts-Hoffmann, F., Schmitz, N., Shen, K., Shan, S.O., Ataide, S.F., Ban, N.

Revision History

  • 2014-01-08
    Type: Citation | Details: JRNL