4C30

Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2

Structural Biology Knowledgebase: 4C30 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.228

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4C30

Classification: HYDROLASE / DNA

Total Structure Weight: 328150.78


Macromolecule Entities
Molecule Chains Length Organism Details
DNA HELICASE II A, D, F, I 665 Deinococcus radiodurans EC#: 3.6.4.12 IUBMB
Fragment: C-TERMINAL TRUNCATION, RESIDUES 1-665
Gene Name(s): DR_1775
Macromolecule Entities
Molecule Chains Length Organism Details
DNA STRAND FOR25 K, X 25 Synthetic construct
DNA STRAND REV25 L, Y 25 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, F PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, D, F, I MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.228
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.49 α = 90.00
b = 89.79 β = 89.97
c = 293.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-08-21
  • Released Date: 2013-10-30
  • Deposition author(s): Stelter, M., Acajjaoui, S., McSweeney, S., Timmins, J.

Revision History

No revisions since initial release