4B3P

Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface

Structural Biology Knowledgebase: 4B3P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.84 Å
  • R-Value Free: 0.404
  • R-Value Work: 0.364

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B3P

Classification: HYDROLASE / RNA / DNA

Total Structure Weight: 136965.28


Macromolecule Entities
Molecule Chains Length Organism Details
REVERSE TRANSCRIPTASE/RIBONUCLEASE H A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB 3.4.23.16 IUBMB
Mutation: S68G, R83K, I411V, N447S, R461K, Y483H, D498A, V559I
Gene Name(s): gag-pol
P51 RT B 454 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.13 IUBMB 3.4.23.16 IUBMB
Mutation: S68G, R83K, I411V
Gene Name(s): gag-pol
Macromolecule Entities
Molecule Chains Length Organism Details
DNA D 29 Synthetic construct
RNA R 34 Synthetic construct

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
N
Query on N
R RNA LINKING C5 H11 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.84 Å
  • R-Value Free: 0.404
  • R-Value Work: 0.364
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 163.00 α = 90.00
b = 163.00 β = 90.00
c = 229.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-25
  • Released Date: 2013-01-16
  • Deposition author(s): Lapkouski, M., Tian, L., Miller, J.T., Le Grice, S.F.J., Yang, W.

Revision History

  • 2013-02-20
    Type: Citation | Details: JRNL
  • 2013-01-23
    Type: Citation | Details: JRNL