4AZY

Design and Synthesis of BACE1 Inhibitors with In Vivo Brain Reduction of beta-Amyloid Peptides (COMPOUND 10)

Structural Biology Knowledgebase: 4AZY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AZY

Classification: HYDROLASE

Total Structure Weight: 46490.45

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-SECRETASE 1 A 411 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: RESIDUES 43-453
Mutation: R497K, R498K
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
7F3
Query on 7F3

A (1S)-4-fluoro-1-(4-fluoro-3-pyrimidin-5-ylphenyl)- 1-[2-(trifluoromethyl)pyridin-4-yl]-1H-isoindol- 3-amine
C24 H14 F5 N5
UDQUVXUVXUGJFO-QHCPKHFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
7F3 IC50: 22 - 204 nM (97 - 99) BindingDB

IC50: 125 nM  BindingMOAD
IC50: 198 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.176
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.54 α = 90.00
b = 76.39 β = 90.00
c = 104.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-27
  • Released Date: 2012-10-17
  • Deposition author(s): Swahn, B.M., Kolmodin, K., Karlstrom, S., Vonberg, S., Soderman, P., Holenz, J., Berg, S., Lindstrom, J., Sundstrom, M., Turek, D., Kihlstrom, J., Slivo, C., Andersson, L., Pyring, D., Ohberg, L., Kers, A., Bogar, K., Bergh, M., Olsson, L.L., Janson, J., Eketjall, S., Georgievska, B., Jeppsson, F., Falting, J.

Revision History

  • 2012-11-21
    Type: Citation | Details: JRNL