4AZY

Design and Synthesis of BACE1 Inhibitors with In Vivo Brain Reduction of beta-Amyloid Peptides (COMPOUND 10)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 4AZY

Classification: HYDROLASE

Total Structure Weight: 46489.96

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-SECRETASE 1 A 411 Homo sapiens EC#: 3.4.23.46 IUBMB
Fragment: RESIDUES 43-453
Mutation: R497K, R498K
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
7F3
Query on 7F3

A (1S)-4-fluoro-1-(4-fluoro-3-pyrimidin-5-ylphenyl)- 1-[2-(trifluoromethyl)pyridin-4-yl]-1H-isoindol- 3-amine
C24 H14 F5 N5
UDQUVXUVXUGJFO-QHCPKHFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
7F3 IC50: 22 - 204 nM (97 - 99) BindingDB

IC50: 125 nM  BindingMOAD
IC50: 198 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 47.54 α = 90.00
b = 76.39 β = 90.00
c = 104.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-27
  • Released Date: 2012-10-17
  • Deposition author(s): Swahn, B.M., Kolmodin, K., Karlstrom, S., von Berg, S., Soderman, P., Holenz, J., Berg, S., Lindstrom, J., Sundstrom, M., Turek, D., Kihlstrom, J., Slivo, C., Andersson, L., Pyring, D., Ohberg, L., Kers, A., Bogar, K., Bergh, M., Olsson, L.L., Janson, J., Eketjall, S., Georgievska, B., Jeppsson, F., Falting, J.

Revision History

  • Version 1_0: 2012-10-17

    Type: Initial release

  • Version 1_1: 2012-11-21

    Type: Database references

  • Version 1_2: 2018-02-14

    Type: Database references, Structure summary