4AKD

High resolution structure of Mannose Binding lectin from Champedak (CMB)

Structural Biology Knowledgebase: 4AKD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AKD

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 65848.67

Macromolecule Entities
Molecule Chains Length Organism Details
MANNOSE-SPECIFIC LECTIN KM+ A, B, C, D 150 Artocarpus integer Mutation: P14S, S42C, P51S, S53P, R71Q, D74E, E78V, A85G, P14S, S42C, P51S, S53P, R71Q, D74E, E78V, A85G, P14S, S42C, P51S, S53P, R71Q, D74E, E78V, A85G, P14S, S42C, P51S, S53P, R71Q, D74E, E78V, A85G
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B, C, D CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.193
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 76.89 α = 90.00
b = 86.22 β = 90.00
c = 95.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-22
  • Released Date: 2013-02-27
  • Deposition author(s): Gabrielsen, M., Abdul-Rahman, P.S., Othman, S., Hashim, O.H., Cogdell, R.J.

Revision History

  • 2014-06-18
    Type: Citation | Details: JRNL
  • 2014-06-11
    Type: Citation | Details: JRNL