4ABW

CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-6

Structural Biology Knowledgebase: 4ABW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 4ABW

Classification: TRANSPORT PROTEIN

Total Structure Weight: 27488.70

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSTHYRETIN A, B 124 Homo sapiens Fragment: RESIDUES 21-144
Gene Name(s): TTR Gene View PALB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
42M
Query on 42M

A, B {4-[4-(hydroxymethyl)-2-methoxyphenoxy]benzene- 1,3-diyl}bis[hydroxy(oxo)ammonium]
C14 H14 N2 O7
RYNICYNSKYXXPK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
42M IC50: 20000 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.218
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.81 α = 90.00
b = 42.84 β = 90.00
c = 64.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-11
  • Released Date: 2012-09-26
  • Deposition author(s): Tomar, D., Khan, T., Singh, R.R., Mishra, S., Gupta, S., Surolia, A., Salunke, D.M.

Revision History

No revisions since initial release