3ZC0

Structure of AfC3PO - duplex RNA complex

Structural Biology Knowledgebase: 3ZC0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZC0

Classification: HYDROLASE / RNA

Total Structure Weight: 289253.53


Macromolecule Entities
Molecule Chains Length Organism Details
AFTRAX A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 199 Archaeoglobus fulgidus Mutation: D114A
Gene Name(s): AF_2260
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*UP*CP*GP*AP*CP*GP*CP*GP*UP*CP*GP*AP*AP*UP*U)-3' M, N, O 16 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

B, F, G, K CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H, I, J, K, L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.208
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 183.06 α = 90.00
b = 183.06 β = 90.00
c = 198.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-14
  • Released Date: 2013-01-23
  • Deposition author(s): Parizotto, E.A., Lowe, E.D., Parker, J.S.

Revision History

  • 2013-03-20
    Type: Citation | Details: JRNL
  • 2013-02-27
    Type: Citation | Details: JRNL
  • 2013-01-30
    Type: Citation | Details: JRNL