3W55

The structure of ERK2 in complex with FR148083

Structural Biology Knowledgebase: 3W55 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.260

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W55

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 42594.22

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 1 A 368 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK1 Gene View ERK2 PRKM1 PRKM2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FM
Query on 1FM

A (3S,5Z,8S,9S,11E)-8,9,16-trihydroxy-14-methoxy- 3-methyl-3,4,9,10-tetrahydro-1H-2-benzoxacyclotetradecine- 1,7(8H)-dione
(5Z)-7-Oxozeaenol (Synonym)
C19 H22 O7
NEQZWEXWOFPKOT-BYRRXHGESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1FM IC50: 80 - 1400 nM (86 - 100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.260
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.87 α = 90.00
b = 71.24 β = 90.00
c = 120.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-21
  • Released Date: 2013-02-06
  • Deposition author(s): Ohori, M., Kinoshita, T.
  • Previous versions: 2E14

Revision History

No revisions since initial release