3VUZ

Crystal structure of histone methyltransferase SET7/9 in comlex with AAM-1

Structural Biology Knowledgebase: 3VUZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUZ

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 29534.96

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SETD7 A 263 Homo sapiens EC#: 2.1.1.43 IUBMB
Fragment: UNP residues 111-366
Gene Name(s): SETD7 Gene View KIAA1717 KMT7 SET7 SET9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K15
Query on K15

A 5'-{[(3S)-3-amino-3-carboxypropyl](hexyl)amino}- 5'-deoxyadenosine
C20 H33 N7 O5
PUFLVFWUSGLSNL-BPAMBQHCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.183
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 101.81 α = 90.00
b = 39.22 β = 90.00
c = 67.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-10
  • Released Date: 2013-03-27
  • Deposition author(s): Niwa, H., Handa, N., Tomabechi, Y., Honda, K., Toyama, M., Ohsawa, N., Shirouzu, M., Kagechika, H., Hirano, T., Umehara, T., Yokoyama, S.

Revision History

  • 2014-04-30
    Type: Citation | Details: Citation update