3VUW

Crystal structure of A20 ZF7 in complex with linear ubiquitin, form I

Structural Biology Knowledgebase: 3VUW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUW

Classification: PROTEIN BINDING / METAL BINDING PROTEIN

Total Structure Weight: 37802.71

Macromolecule Entities
Molecule Chains Length Organism Details
Polyubiquitin-C A, B, C 76 Homo sapiens Fragment: Ubiquitin
Gene Name(s): UBC Gene View
Tumor necrosis factor alpha-induced protein 3 E, F, G 34 Homo sapiens EC#: 3.4.19.12 IUBMB 6.3.2 IUBMB
Fragment: A20-type 7 Zinc finger domain, residues 757-789
Gene Name(s): TNFAIP3 Gene View OTUD7C

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

E, F, G ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

E, F, G POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.178
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.17 α = 70.08
b = 51.99 β = 80.25
c = 52.18 γ = 78.05

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-09
  • Released Date: 2013-02-13
  • Deposition author(s): Nishimasu, H., Ishitani, R., Nureki, O.

Revision History

No revisions since initial release