3VQA

HIV-1 IN core domain in complex with 1-benzothiophen-6-amine 1,1-dioxide

Structural Biology Knowledgebase: 3VQA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VQA

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35566.55

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 158 Human immunodeficiency virus 1 Fragment: integrase core domain, UNP residues 770-927
Mutation: C56S, W131D, F139D, F185H
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SUC
Query on SUC

B SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MWP
Query on MWP

B 1-benzothiophen-6-amine 1,1-dioxide
1-dione, (Synonym)
C8 H7 N O2 S
KRUCRVZSHWOMHC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.212
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.87 α = 90.00
b = 61.02 β = 90.00
c = 81.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-20
  • Released Date: 2013-01-30
  • Deposition author(s): Wielens, J., Chalmers, D.K., Parker, M.W., Scanlon, M.J.

Revision History

No revisions since initial release